Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX360344: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Dublin str. AZ_TG68224 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 26 spots, 13,035 bases, 86,046b downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Arizona State Public Health Laboratory

PRJNA183847 • SRP028894 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen sample from Salmonella enterica

SAMN02261141 • SRS487541 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Dublin

Library:

Name: Salmonella enterica str. CFSAN005348_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Dublin str. AZ_TG68224.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 26 spots, 13,035 bases, 86,046b

Run	# of Spots	# of Bases	Size	Published
SRR1002868	26	13,035	86,046b	2013-09-25

ID:: 509549

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